White rot Basidiomycetes isolated from Chiloé National Park in Los Lagos region, Chile.
Identifieur interne : 000353 ( Main/Exploration ); précédent : 000352; suivant : 000354White rot Basidiomycetes isolated from Chiloé National Park in Los Lagos region, Chile.
Auteurs : Rodrigo Ortiz [Chili] ; José Navarrete ; Claudia Oviedo ; Mario Párraga ; Ivo Carrasco ; Eduardo De La Vega ; Manuel Ortiz ; Robert A. BlanchetteSource :
- Antonie van Leeuwenhoek [ 1572-9699 ] ; 2013.
Descripteurs français
- KwdFr :
- ADN fongique (composition chimique), ADN fongique (génétique), ADN ribosomique (composition chimique), ADN ribosomique (génétique), ARN fongique (génétique), ARN ribosomique (génétique), Analyse de séquence d'ADN (MeSH), Basidiomycota (classification), Basidiomycota (isolement et purification), Bois (microbiologie), Bois (ultrastructure), Chili (MeSH), Données de séquences moléculaires (MeSH), Espaceur de l'ADN ribosomique (composition chimique), Espaceur de l'ADN ribosomique (génétique), Gènes d'ARN ribosomique (MeSH), Microscopie électronique (MeSH).
- MESH :
- composition chimique : ADN fongique, ADN ribosomique, Basidiomycota, Espaceur de l'ADN ribosomique.
- génétique : ADN fongique, ADN ribosomique, ARN fongique, ARN ribosomique, Espaceur de l'ADN ribosomique.
- isolement et purification : Basidiomycota.
- microbiologie : Bois.
- Analyse de séquence d'ADN, Bois, Chili, Données de séquences moléculaires, Gènes d'ARN ribosomique, Microscopie électronique.
- Wicri :
- geographic : Chili.
English descriptors
- KwdEn :
- Basidiomycota (classification), Basidiomycota (isolation & purification), Chile (MeSH), DNA, Fungal (chemistry), DNA, Fungal (genetics), DNA, Ribosomal (chemistry), DNA, Ribosomal (genetics), DNA, Ribosomal Spacer (chemistry), DNA, Ribosomal Spacer (genetics), Genes, rRNA (MeSH), Microscopy, Electron (MeSH), Molecular Sequence Data (MeSH), RNA, Fungal (genetics), RNA, Ribosomal (genetics), Sequence Analysis, DNA (MeSH), Wood (microbiology), Wood (ultrastructure).
- MESH :
- chemical , chemistry : DNA, Fungal, DNA, Ribosomal, DNA, Ribosomal Spacer.
- chemical , genetics : DNA, Fungal, DNA, Ribosomal, DNA, Ribosomal Spacer, RNA, Fungal, RNA, Ribosomal.
- geographic : Chile.
- classification : Basidiomycota.
- isolation & purification : Basidiomycota.
- microbiology : Wood.
- ultrastructure : Wood.
- Genes, rRNA, Microscopy, Electron, Molecular Sequence Data, Sequence Analysis, DNA.
Abstract
Wood decomposition is an important component in forest ecosystems but information about the diversity of fungi causing decay is lacking. This is especially true for the temperate rain forests in Chile. These investigations show results of a biodiversity study of white-rot fungi in wood obtained from Chiloé National Park in Los Lagos region, Chile. Culturing from white-rotted wood followed by sequencing of the complete internal transcribed spacer region of the ribosomal DNA (rDNA) or partial large subunit region of the rDNA, identified 12 different species in the Basidiomycota. All of these fungi were characterized as white rot fungi and were identified with a BLAST match of 97 % or greater to sequences in the GenBank database. Fungi obtained were species of Phlebia, Mycoacia, Hyphodontia, Bjerkandera, Phanerochaete, Stereum, Trametes, and Ceriporiopsis. This report identifies for the first time in Chile the species Ceriporiopsis subvermispora, Hyphodontia radula, Phlebia radiata, Phanerochaete affinis, Peniophora cinerea, Stereum gausapatum, Phlebia setulosa and Phanerochaete sordida. Scanning electron microscopy was used to characterize the type of decay caused by the fungi that were isolated and a combination of selective lignin degraders and simultaneous white rot fungi were found. Fungi that cause a selective degradation of lignin are of interest for bioprocessing technologies that require modification or degradation of lignin without cellulose removal.
DOI: 10.1007/s10482-013-0041-z
PubMed: 24068453
Affiliations:
Links toward previous steps (curation, corpus...)
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Blanchette</name></author></analytic><series><title level="j">Antonie van Leeuwenhoek</title><idno type="eISSN">1572-9699</idno><imprint><date when="2013" type="published">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Basidiomycota (classification)</term><term>Basidiomycota (isolation & purification)</term><term>Chile (MeSH)</term><term>DNA, Fungal (chemistry)</term><term>DNA, Fungal (genetics)</term><term>DNA, Ribosomal (chemistry)</term><term>DNA, Ribosomal (genetics)</term><term>DNA, Ribosomal Spacer (chemistry)</term><term>DNA, Ribosomal Spacer (genetics)</term><term>Genes, rRNA (MeSH)</term><term>Microscopy, Electron (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>RNA, Fungal (genetics)</term><term>RNA, Ribosomal (genetics)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Wood (microbiology)</term><term>Wood (ultrastructure)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN fongique (composition chimique)</term><term>ADN fongique (génétique)</term><term>ADN ribosomique (composition chimique)</term><term>ADN ribosomique (génétique)</term><term>ARN fongique (génétique)</term><term>ARN ribosomique (génétique)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Basidiomycota (classification)</term><term>Basidiomycota (isolement et purification)</term><term>Bois (microbiologie)</term><term>Bois (ultrastructure)</term><term>Chili (MeSH)</term><term>Données de séquences moléculaires (MeSH)</term><term>Espaceur de l'ADN ribosomique (composition chimique)</term><term>Espaceur de l'ADN ribosomique (génétique)</term><term>Gènes d'ARN ribosomique (MeSH)</term><term>Microscopie électronique (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>DNA, Fungal</term><term>DNA, Ribosomal</term><term>DNA, Ribosomal Spacer</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Fungal</term><term>DNA, Ribosomal</term><term>DNA, Ribosomal Spacer</term><term>RNA, Fungal</term><term>RNA, Ribosomal</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Chile</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>ADN fongique</term><term>ADN ribosomique</term><term>Basidiomycota</term><term>Espaceur de l'ADN ribosomique</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN fongique</term><term>ADN ribosomique</term><term>ARN fongique</term><term>ARN ribosomique</term><term>Espaceur de l'ADN ribosomique</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Bois</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Wood</term></keywords><keywords scheme="MESH" qualifier="ultrastructure" xml:lang="en"><term>Wood</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Genes, rRNA</term><term>Microscopy, Electron</term><term>Molecular Sequence Data</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Bois</term><term>Chili</term><term>Données de séquences moléculaires</term><term>Gènes d'ARN ribosomique</term><term>Microscopie électronique</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Chili</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Wood decomposition is an important component in forest ecosystems but information about the diversity of fungi causing decay is lacking. This is especially true for the temperate rain forests in Chile. These investigations show results of a biodiversity study of white-rot fungi in wood obtained from Chiloé National Park in Los Lagos region, Chile. Culturing from white-rotted wood followed by sequencing of the complete internal transcribed spacer region of the ribosomal DNA (rDNA) or partial large subunit region of the rDNA, identified 12 different species in the Basidiomycota. All of these fungi were characterized as white rot fungi and were identified with a BLAST match of 97 % or greater to sequences in the GenBank database. Fungi obtained were species of Phlebia, Mycoacia, Hyphodontia, Bjerkandera, Phanerochaete, Stereum, Trametes, and Ceriporiopsis. This report identifies for the first time in Chile the species Ceriporiopsis subvermispora, Hyphodontia radula, Phlebia radiata, Phanerochaete affinis, Peniophora cinerea, Stereum gausapatum, Phlebia setulosa and Phanerochaete sordida. Scanning electron microscopy was used to characterize the type of decay caused by the fungi that were isolated and a combination of selective lignin degraders and simultaneous white rot fungi were found. Fungi that cause a selective degradation of lignin are of interest for bioprocessing technologies that require modification or degradation of lignin without cellulose removal.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24068453</PMID><DateCompleted><Year>2014</Year><Month>06</Month><Day>12</Day></DateCompleted><DateRevised><Year>2013</Year><Month>11</Month><Day>08</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1572-9699</ISSN><JournalIssue CitedMedium="Internet"><Volume>104</Volume><Issue>6</Issue><PubDate><Year>2013</Year><Month>Dec</Month></PubDate></JournalIssue><Title>Antonie van Leeuwenhoek</Title><ISOAbbreviation>Antonie Van Leeuwenhoek</ISOAbbreviation></Journal><ArticleTitle>White rot Basidiomycetes isolated from Chiloé National Park in Los Lagos region, Chile.</ArticleTitle><Pagination><MedlinePgn>1193-203</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s10482-013-0041-z</ELocationID><Abstract><AbstractText>Wood decomposition is an important component in forest ecosystems but information about the diversity of fungi causing decay is lacking. This is especially true for the temperate rain forests in Chile. These investigations show results of a biodiversity study of white-rot fungi in wood obtained from Chiloé National Park in Los Lagos region, Chile. Culturing from white-rotted wood followed by sequencing of the complete internal transcribed spacer region of the ribosomal DNA (rDNA) or partial large subunit region of the rDNA, identified 12 different species in the Basidiomycota. All of these fungi were characterized as white rot fungi and were identified with a BLAST match of 97 % or greater to sequences in the GenBank database. Fungi obtained were species of Phlebia, Mycoacia, Hyphodontia, Bjerkandera, Phanerochaete, Stereum, Trametes, and Ceriporiopsis. This report identifies for the first time in Chile the species Ceriporiopsis subvermispora, Hyphodontia radula, Phlebia radiata, Phanerochaete affinis, Peniophora cinerea, Stereum gausapatum, Phlebia setulosa and Phanerochaete sordida. Scanning electron microscopy was used to characterize the type of decay caused by the fungi that were isolated and a combination of selective lignin degraders and simultaneous white rot fungi were found. Fungi that cause a selective degradation of lignin are of interest for bioprocessing technologies that require modification or degradation of lignin without cellulose removal.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ortiz</LastName><ForeName>Rodrigo</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Departamento de Ingeniería en Maderas, Facultad de Ingeniería, Universidad del Bío Bío, Avenida Collao 1202, Casilla 5-C, 4051381, Concepción, Chile, rodrigo.ortiz@uv.cl.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Navarrete</LastName><ForeName>José</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Oviedo</LastName><ForeName>Claudia</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Párraga</LastName><ForeName>Mario</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Carrasco</LastName><ForeName>Ivo</ForeName><Initials>I</Initials></Author><Author ValidYN="Y"><LastName>de la Vega</LastName><ForeName>Eduardo</ForeName><Initials>E</Initials></Author><Author ValidYN="Y"><LastName>Ortiz</LastName><ForeName>Manuel</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Blanchette</LastName><ForeName>Robert A</ForeName><Initials>RA</Initials></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName><AccessionNumberList><AccessionNumber>KF562007</AccessionNumber><AccessionNumber>KF562008</AccessionNumber><AccessionNumber>KF562009</AccessionNumber><AccessionNumber>KF562010</AccessionNumber><AccessionNumber>KF562011</AccessionNumber><AccessionNumber>KF562012</AccessionNumber><AccessionNumber>KF562013</AccessionNumber><AccessionNumber>KF562014</AccessionNumber><AccessionNumber>KF562015</AccessionNumber><AccessionNumber>KF562016</AccessionNumber><AccessionNumber>KF562017</AccessionNumber><AccessionNumber>KF562018</AccessionNumber><AccessionNumber>KF562019</AccessionNumber><AccessionNumber>KF562020</AccessionNumber></AccessionNumberList></DataBank></DataBankList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2013</Year><Month>09</Month><Day>26</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Antonie Van Leeuwenhoek</MedlineTA><NlmUniqueID>0372625</NlmUniqueID><ISSNLinking>0003-6072</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004271">DNA, Fungal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004275">DNA, Ribosomal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D021903">DNA, Ribosomal Spacer</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012331">RNA, Fungal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012335">RNA, Ribosomal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="C065096">RNA, ribosomal, 26S</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001487" MajorTopicYN="N">Basidiomycota</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002677" MajorTopicYN="N" Type="Geographic">Chile</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004271" MajorTopicYN="N">DNA, Fungal</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004275" MajorTopicYN="N">DNA, Ribosomal</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D021903" MajorTopicYN="N">DNA, Ribosomal Spacer</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020459" MajorTopicYN="N">Genes, rRNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008854" MajorTopicYN="N">Microscopy, Electron</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012331" MajorTopicYN="N">RNA, Fungal</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012335" MajorTopicYN="N">RNA, Ribosomal</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014934" MajorTopicYN="N">Wood</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName><QualifierName UI="Q000648" MajorTopicYN="N">ultrastructure</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2013</Year><Month>06</Month><Day>25</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2013</Year><Month>09</Month><Day>19</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2013</Year><Month>9</Month><Day>27</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2013</Year><Month>9</Month><Day>27</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2014</Year><Month>6</Month><Day>13</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">24068453</ArticleId><ArticleId IdType="doi">10.1007/s10482-013-0041-z</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Chili</li></country></list><tree><noCountry><name sortKey="Blanchette, Robert A" sort="Blanchette, Robert A" uniqKey="Blanchette R" first="Robert A" last="Blanchette">Robert A. Blanchette</name><name sortKey="Carrasco, Ivo" sort="Carrasco, Ivo" uniqKey="Carrasco I" first="Ivo" last="Carrasco">Ivo Carrasco</name><name sortKey="De La Vega, Eduardo" sort="De La Vega, Eduardo" uniqKey="De La Vega E" first="Eduardo" last="De La Vega">Eduardo De La Vega</name><name sortKey="Navarrete, Jose" sort="Navarrete, Jose" uniqKey="Navarrete J" first="José" last="Navarrete">José Navarrete</name><name sortKey="Ortiz, Manuel" sort="Ortiz, Manuel" uniqKey="Ortiz M" first="Manuel" last="Ortiz">Manuel Ortiz</name><name sortKey="Oviedo, Claudia" sort="Oviedo, Claudia" uniqKey="Oviedo C" first="Claudia" last="Oviedo">Claudia Oviedo</name><name sortKey="Parraga, Mario" sort="Parraga, Mario" uniqKey="Parraga M" first="Mario" last="Párraga">Mario Párraga</name></noCountry><country name="Chili"><noRegion><name sortKey="Ortiz, Rodrigo" sort="Ortiz, Rodrigo" uniqKey="Ortiz R" first="Rodrigo" last="Ortiz">Rodrigo Ortiz</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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